Healthy Apple Muffins are grain-free and naturally sweetened with fruit. This paleo apple muffin recipe is oil-free, dairy-free and contains no added sweeteners!  Light, fluffy and warmly-spiced with cinnamon, this delicious apple cinnamon muffin recipe is a lovely breakfast or snack!

Apple banana muffins on a white background with fresh apples, ready to serve,

As you may have seen in my Flourless Peanut Butter Banana Brownies and Strawberry Banana Oatmeal Muffin Cups, Iโ€™ve been using ripe bananas for sweetening baked goods. 

Depending on what else is in the treat, sometimes the banana flavor peeks through and sometimes it doesnโ€™t at all!

In the case of these muffins, you do get both banana and apple flavors shining through with that warm cinnamon for a cozy, comforting fall treat.

Even more intriguing is the fact that only 6 ingredients are needed for these luscious babes! PLUS, youโ€™d never know theyโ€™re all-things gluten-free, dairy-free, refined sugar-free, and nutritious.

Letโ€™s discuss these healthy apple muffins further, shall we? You can find the full list of ingredients at any grocery store.

Healthy Apple Cinnamon Muffins on a white table with ripe bananas and fresh apples to the side with a grey napkin.

Ingredients for Healthy Apple Muffins:

Ripe Bananas: These apple muffins are entirely sweetened with fruit! Two ripe bananas and one apple to be specific. Be sure your bananas are plenty ripe, with a lot of brown spots. This signifies they will be very sweet and moist.

The moisture and creaminess of ripe bananas help make a baked good extra tasty. When mashed, the bananas should measure out to 1 cup.

If you don’t like bananas or are allergic, I provide a banana-free version of this recipe below.

Fresh Apples: One medium-sized apple gets peeled then grated up for both sweetness and apple flavor. You can use your favorite apple, but I typically go with gala apples, pink lady apples, or fuji apples. Granny smith apples are customary, because they bring tart flavor to this healthy apple muffin recipe.

Large Eggs: Used for holding the muffins together and making them nice and fluffy, we use a couple of eggs. 

Almond Flour: The grain-free flour of choice in these paleo apple muffins is super fine almond flour. Almond flour makes the texture nice and light. It contains healthy fats, fiber, and a small amount of protein.

Ground Cinnamon: Making the muffins taste like fall exploded all up in them, ground cinnamon gives warm flavor and enhances the apple experience as well. If you have apple pie spice, use it here instead!

Baking Powder & Sea Salt: Baking powder helps leaven the muffins and sea salt brings out the flavors. It also makes the muffins taste sweeter without the need for added sugar.

Optional Add Ins: Add 1/2 cup chopped walnuts or pecans, raisins, and/or top with unsweetened shredded coconut! 

Recipe Adaptations:

  • Use hazelnut flour instead of almond flour. Donโ€™t replace the almond flour with coconut flour because coconut flour requires more eggs and liquid than almond flour, so the whole recipe will require adjustments.
  • Add 2/3 cup of chopped walnuts or pecans for a nutty crunch.
  • For sweeter muffins, add 3 to 4 tablespoons of coconut sugar, brown sugar, or your favorite granulated sweetener.

Letโ€™s bake a batch!

How to Make Healthy Apple Muffins:

Preheat the oven to 350 degrees F and line a muffin tray with 9 paper liners.

Mash the bananas in a measuring cup until very creamy. Be sure you have around 1 cup of mashed banana. 

Transfer the mashed banana to a mixing bowl and add the eggs and grated apple. Whisk the wet ingredients together until very well-combined.

Stainless steel bowl with mashed banana, grated apples, and eggs.

In a separate bowl or measuring cup, stir together the almond flour, sea salt, baking powder, and ground cinnamon until the dry ingredients are combined.

Ingredients for healthy apple muffins - a large measuring cup with all of the dry ingredients inside, ready to mix, and a bowl of wet ingredients to the side.

Transfer the flour mixture to the mixing bowl with the banana-apple mixture and stir well until combined.

Mixing bowl full of apple muffin batter, ready to bake.

Fill the muffin holes up ยพ of the way full with muffin batter. Feel free to sprinkle chopped pecans or walnuts on tops of the muffins.

Bake on the center rack of the preheated oven for 30 to 35 minutes, until muffins are golden brown and feel firm when gently poked. Insert a digital thermometer into the center of one of the muffins. They are ready when they are 190 degrees F or higher in the middle.

Apple cinnamon muffins in a muffin tray fresh out of the oven.

Allow muffins to cool at least 30 minutes in the muffin tin before unwrapping and eating.

Enjoy a muffin warmed up with melted butter and some Greek yogurt or cottage cheese for a balanced breakfast. 

Store muffins in an airtight container in the refrigerator for up to 5 days or freeze in a freezer bag for up to 3 months.

Healthy Apple Muffins on a white backdrop with fresh apples to the side and one muffin on a wooden plate. Ready to eat.

And that’s it! These almond flour apple muffins are a good choice for those who love a sweet treat but like keeping it mindful.

More Healthy Muffin Recipes:

Healthy apple cinnamon muffins for life!

Apple banana muffins on a white background with fresh apples, ready to serve,

Healthy Apple Muffins

4.47 from 49 votes
Grain-free apple cinnamon muffins with no added sweetener! These moist and delicious apple cinnamon muffins are the perfect breakfast or snack.
Prep Time 10 minutes
Cook Time 35 minutes
Total Time 45 minutes
Servings: 9 muffins

Equipment

Ingredients

Instructions

  • Preheat the oven to 350 degrees F and line a muffin tray with 9 muffin papers.
  • Mash the bananas in a measuring cup until very creamy. Be sure you have around 1 cup of mashed banana. Transfer the mashed banana to a mixing bowl and add the eggs and grated apple. Whisk everything together until very well-combined.
  • In a separate bowl or measuring cup, stir together the almond flour, sea salt, baking powder, and ground cinnamon until combined. Transfer the flour mixture to the mixing bowl with the banana-apple mixture and stir well until combined.
  • Fill the muffin holes up ยพ of the way full with muffin batter. Bake on the center rack of the preheated oven for 30 to 35 minutes, until muffins are golden brown and feel firm when gently poked. Insert a digital thermometer into the center of one of the muffins. They are fully cooked if they are 190 degrees F or higher. Allow muffins to cool at least 30 minutes before unwrapping.

Notes

*While the tapioca flour is not mandatory, it results in a more traditional muffin texture. Without it, the muffins are a little grainy, and with it, they taste like they are made with regular flour.
ย 
For sweeter muffins, add 1 to 4 tablespoons of brown sugar, maple sugar, or coconut sugar to the recipe.

Nutrition

Serving: 1of 9 ยท Calories: 197kcal ยท Carbohydrates: 16g ยท Protein: 7g ยท Fat: 12g ยท Fiber: 3g ยท Sugar: 8g
Author: Julia
Course: Breakfast, Muffins, Snack
Cuisine: American
Keyword: almond flour, banana bread, breakfast, dairy free, grain free, healthy, oil free, paleo
Did You Make This Recipe?I want to see it! Tag @the.roasted.root on social media!

Frequently Asked Questions:

Can I Make These Muffins Without Banana?:

You certainly can! If you aren’t into banana, don’t have any on hand, and/or are allergic, no sweat. Omit the bananas and replace them with 1/4 cup coconut oil (melted and cooled) and 1/4 cup pure maple syrup. Keep everything else in the recipe the same.

What are the best kind of apples for these healthy cinnamon apple muffins?

Any type of apple works here! I personally love sweet apples like envy apples, honeycrisp apples, and fuji apples. Tart apples work great too, as they tend to add more of a classic apple flavor. Use the apples you love most during apple season.

Can I do apple chunks instead of grating the apple?

Yes, absolutely! Simply chop the apple into very small pieces. Mix in the chopped apples, just as you would the grated apple. 

Can I use AP flour?

Yes. If you prefer baking with regular all-purpose flour or gluten-free all-purpose flour, use 1 1/2 cups instead of the almond flour. White whole wheat flour works too for whole grains. If you prefer baking with oats, make my Healthy Apple Oatmeal Muffins

Julia Mueller
Meet the Author

Julia Mueller

Julia Mueller is a recipe developer, cookbook author, and founder of The Roasted Root. She has authored three bestselling cookbooks, – Paleo Power Bowls, Delicious Probiotic Drinks, and The Quintessential Kale Cookbook. Her recipes have been featured in several national publications such as BuzzFeed, Self, Tasty, Country Living, Brit.co, etc.

Read More About Julia

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4.47 from 49 votes (38 ratings without comment)

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Questions and Reviews

    1. Hi Judy! You can use 1 cup of applesauce instead of the banana. The muffins won’t be as sweet, but they should still taste yummy. If you want them to taste sweet, I would add 3-4 tablespoons of brown sugar or regular cane sugar. Hope you enjoy! xo

    1. Hi Diana! I haven’t tested this recipe myself using a mini muffin pan, but based on my googling, it looks like you should bake mini muffins at 350 degrees F for about 11 minutes. I hope you love them! xo

  1. Awesome muffins I only made half of the recipe and made 6 and add pecans they taste delicious ๐Ÿ’“๐Ÿ’“๐Ÿ‘

    1. Hi Brittany! Excellent question! I’ve never tried it myself, but I’m sure people do it all the time. I would do a quick google to see if there’s anything else you need to do since thawed bananas tend to be a bit liquidy. Hope you enjoy! xoxo

    1. Hi Sandy!

      Yes, absolutely! In fact, I always freeze them. Simply stick them in a freezer safe container or zip lock bag. I just microwave mine to heat them up, but you can always allow them to thaw completely if you prefer. ๐Ÿ™‚

      1. Hi Ellie!

        I find most baked goods are best within 3 months of being frozen. While they can last longer if they’re well-sealed, I find the flavor is best and no freezer burn within a 3-month window. Hope this helps!

  2. Hi, can I use oat flour vs almond flour? Thank you for the recipe btw. I canโ€™t wait to make these!!!

    1. Hi Aly! I haven’t tested the recipe using oat flour, but I imagine it will work. You may need to add some extra liquid (oil or coconut milk) if the oat flour is more absorbent, but I think they should be very tasty ๐Ÿ™‚