Preheat the oven to 350 degrees Fahrenheit and line a large baking sheet with parchment paper.
In a medium sized mixing bowl, whisk together the egg, melted (and cooled) butter, molasses, pure maple syrup, and ginger until the wet ingredients are well combined.
In a separate bowl, stir together the almond flour, tapioca flour, baking powder, baking soda, sea salt, ground cinnamon, and ground nutmeg until the dry ingredients are combined and the almond flour lumps are out.
Pour the dry ingredients into the bowl with the wet ingredients and mix well until a sticky dough forms. The cookie dough will be much stickier than normal cookie dough - this is normal.
Use a small cookie scoop, small ice cream scoop, or two spoons to scoop gingerbread cookie dough onto the parchment-lined baking sheet, leaving two inches of space between the cookie dough balls. Note that the dough will not generate a smooth ball of dough, as the consistency is fairly sticky.
Bake on the center rack of the preheated oven for 7-9 minutes, or until the sides have firmed up but the center is still chewy. For a soft cookie with gooey centers, bake for 7 minutes and for firmer cookies, bake for 8 to 9 and for crispy cookies, bake for 10 to 12 minutes.
Allow cookies to cool to room temperature before moving them. They are very delicate when they are still warm, so I recommend keeping them on the cookie sheet throughout the cooling process.